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自由基S-腺苷甲硫氨酸酶中超交换作用以及交换增强对Fe4S4介导的SAM活化的调控机制

Super-exchange and Exchange-Enhanced Reactivity in Fe4S4-Mediated Activation of SAM by Radical SAM Enzymes

  • 摘要: 4Fe-4S依赖的自由基S-腺苷甲硫氨酸(SAM)蛋白是氧化还原酶的超家族,它们通过5'-脱氧腺苷自由基中间体催化一系列具有挑战性的转化. 尽管自由基S-腺苷甲硫氨酸酶的结构和功能已得到广泛研究,但这些酶中4Fe-4S簇的电子态对反应的依赖性仍不清楚. 本文通过量子力学/分子力学组合计算阐明了丙酮酸-甲酸裂解酶激活酶中4Fe-4S簇的电子态对S-腺苷甲硫氨酸活化的调控机制. 计算结果表明,自由基S-腺苷甲硫氨酸酶中S-腺苷甲硫氨酸的活化是由4Fe-4S簇中超交换和交换增强作用共同决定. 4Fe-4S簇中的超交换耦合有利于两个相邻对之间的反铁磁耦合,这使得4Fe-4S^1+簇的\alpha电子而不是\beta电子参与S-腺苷甲硫氨酸的活化. 同时在最有利于S-C5'还原裂解的电子态中,Fe4将贡献其\alpha电子参与S-腺苷甲硫氨酸活化,以使Fe4原子获得最大交换相互作用. 这种超交换和交换增强的反应性构成自由基S-腺苷甲硫氨酸酶中4Fe-4S簇反应性调控的一般规则.

     

    Abstract: 4Fe-4S-dependent radical S-adenosylmethionine (SAM) proteins are a superfamily of oxidoreductases that can catalyze a series of challenging transformations using the common 5-dAdo radical intermediate. Although the structures and functions of radical SAM enzymes have been extensively studied, the electronic state-dependent reactions of the 4Fe-4S clusters in these enzymes are still elusive. Herein we performed QM/MM calculations to elucidate the electronic state-dependent reactivity of the 4Fe-4S cluster in pyruvate-formate lyase activating enzyme. Our calculations show that the electronic state-dependent SAM activation by the 4Fe-4S clusters in radical SAM enzyme is determined by both the super-exchange and exchange-enhanced reactivities. The super-exchange coupling in the 4Fe-4S cluster favors the antiferromagnetic coupling between two neighbouring pairs, which results in the \alpha-electron rather than the \beta-electron donation from the 4Fe-4S^1+ cluster toward the SAM activation. Meanwhile, in the most favorable electronic state for the reductive cleavage of S-C5', Fe4 would donate its \alpha-electron to gain the maximum exchange interactions in the Fe4-block. Such super-exchange and exchange-enhanced reactivity could be the general principles for reactivities of 4Fe-4S cluster in RS enzymes.

     

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